FastQCFastQC Report
Wed 8 May 2024
EGAF00005491323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78383
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAACCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGACCAAAAGT900.11482081573810647No Hit
ACTTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGACCAAAAGT870.11099345521350293No Hit
ATCTCCTACGGGAGGCAGCAGTGGGGAATATTGGACAATGGACCAAAAGT870.11099345521350293No Hit
TCAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC870.11099345521350293No Hit
TTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC850.1084418815304339No Hit
ATCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC810.10333873416429583No Hit
CTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC810.10333873416429583No Hit
TTTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC810.10333873416429583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)