FastQCFastQC Report
Wed 8 May 2024
EGAF00005491341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70954
Total Bases21.3 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC850.11979592411985229No Hit
TTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC810.11415846886715336No Hit
CTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC790.11133974124080391No Hit
ACATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC780.10993037742762918No Hit
TAATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC770.10852101361445443No Hit
CTTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC770.10852101361445443No Hit
CACACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC770.10852101361445443No Hit
TATTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC770.10852101361445443No Hit
ATAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC760.1071116498012797No Hit
TACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC750.10570228598810498No Hit
TTTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC750.10570228598810498No Hit
TTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC740.10429292217493025No Hit
ATCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC730.1028835583617555No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC730.1028835583617555No Hit
TTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC730.1028835583617555No Hit
TCGTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC730.1028835583617555No Hit
CATTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC730.1028835583617555No Hit
TCTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC720.10147419454858077No Hit
ATCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC710.10006483073540604No Hit
TCTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC710.10006483073540604No Hit
ACTTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC710.10006483073540604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)