FastQCFastQC Report
Wed 8 May 2024
EGAF00005491369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76882
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC990.12876876251918526No Hit
TCATCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC970.1261673733773835No Hit
CACACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC950.1235659842355818No Hit
TTTTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC880.11446112223927576No Hit
TTCTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC870.1131604276683749No Hit
TTAACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC870.1131604276683749No Hit
ACATCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC870.1131604276683749No Hit
TAATCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC860.11185973309747405No Hit
ATCACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC840.10925834395567233No Hit
TTATCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC840.10925834395567233No Hit
TCTTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC830.10795764938477147No Hit
TCTACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC830.10795764938477147No Hit
CAAACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC820.10665695481387061No Hit
TCAACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC820.10665695481387061No Hit
TTACCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC810.10535626024296976No Hit
TACACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC810.10535626024296976No Hit
TTGACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC800.10405556567206888No Hit
GTCACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC800.10405556567206888No Hit
CACTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC800.10405556567206888No Hit
TTCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC790.10275487110116802No Hit
AACACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC780.10145417653026716No Hit
TTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC780.10145417653026716No Hit
TTTACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC780.10145417653026716No Hit
ATAACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC770.1001534819593663No Hit
TCCACCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC770.1001534819593663No Hit
ATCTCCTACGGGAGGCAGCAGTAGGGAATCTTCGGCAATGGGGGCAACCC770.1001534819593663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)