FastQCFastQC Report
Wed 8 May 2024
EGAF00005491379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59288
Total Bases17.8 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC800.1349345567399811No Hit
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC770.1298745108622318No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC770.1298745108622318No Hit
CTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC720.12144110106598299No Hit
TACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC710.11975441910673323No Hit
TCCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC710.11975441910673323No Hit
ATAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC700.11806773714748346No Hit
TCAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC700.11806773714748346No Hit
CTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC680.11469437322898393No Hit
TTCCCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC680.11469437322898393No Hit
ACCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC660.11132100931048443No Hit
CCAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC650.10963432735123466No Hit
TAGTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC650.10963432735123466No Hit
TTGTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC650.10963432735123466No Hit
TTACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC640.1079476453919849No Hit
ATTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC640.1079476453919849No Hit
TTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC630.10626096343273513No Hit
TACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC630.10626096343273513No Hit
CTACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC630.10626096343273513No Hit
CTTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC620.10457428147348537No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCC620.10457428147348537No Hit
AACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC620.10457428147348537No Hit
TATCCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC610.1028875995142356No Hit
CCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAAAGTC600.10120091755498584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)