FastQCFastQC Report
Wed 8 May 2024
EGAF00005491569

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491569
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96184
Total Bases28.9 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1120.1164434833236297No Hit
TCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1120.1164434833236297No Hit
AACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1060.11020543957414955No Hit
TCAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1050.10916576561590285No Hit
CTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1050.10916576561590285No Hit
TAATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1040.10812609165765615No Hit
TACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1020.10604674374116278No Hit
TTCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1020.10604674374116278No Hit
CCCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1020.10604674374116278No Hit
ATTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1020.10604674374116278No Hit
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1020.10604674374116278No Hit
CAATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1010.10500706978291607No Hit
CTTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC1000.10396739582466939No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC990.10292772186642268No Hit
GTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC990.10292772186642268No Hit
ATATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC980.10188804790817599No Hit
CACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC980.10188804790817599No Hit
GTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGTAAGCC970.1008483739499293No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)