FastQCFastQC Report
Wed 8 May 2024
EGAF00005491703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61108
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC710.11618773319368986No Hit
TTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC680.11127839235451986No Hit
ACAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC660.10800549846173987No Hit
ACCCCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC650.10636905151534988No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC650.10636905151534988No Hit
ATCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC650.10636905151534988No Hit
TCACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC640.10473260456895987No Hit
CTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC640.10473260456895987No Hit
ATAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC630.10309615762256988No Hit
CTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGGAAGCC620.10145971067617987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)