FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005491831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82440
Sequences flagged as poor quality0
Sequence length301
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1250.15162542455118874No Hit
TTCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1150.13949539058709365No Hit
CTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1130.13706938379427464No Hit
TCTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1120.13585638039786513No Hit
CCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1090.13221737020863658No Hit
TAAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1070.12979136341581757No Hit
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1070.12979136341581757No Hit
AACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1060.12857836001940806No Hit
TCCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1050.12736535662299855No Hit
TTGACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1050.12736535662299855No Hit
ATTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1050.12736535662299855No Hit
CAATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1040.12615235322658902No Hit
ATCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1030.12493934983017954No Hit
ACATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1020.12372634643377002No Hit
ACCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1020.12372634643377002No Hit
TACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1020.12372634643377002No Hit
CTCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1010.1225133430373605No Hit
ATATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1010.1225133430373605No Hit
TCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1010.1225133430373605No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1000.12130033964095098No Hit
CACACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1000.12130033964095098No Hit
ACCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1000.12130033964095098No Hit
ACTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC1000.12130033964095098No Hit
ACAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC990.12008733624454149No Hit
ATAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC980.11887433284813198No Hit
TTCCCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC980.11887433284813198No Hit
TTTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC970.11766132945172246No Hit
TCACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC960.11644832605531297No Hit
CCTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC950.11523532265890345No Hit
CTTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC950.11523532265890345No Hit
AAATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC950.11523532265890345No Hit
TTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC940.11402231926249393No Hit
TTGGCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC930.11280931586608442No Hit
CCAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC930.11280931586608442No Hit
CTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC930.11280931586608442No Hit
TTACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC920.11159631246967493No Hit
CTCCCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC920.11159631246967493No Hit
CCCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC920.11159631246967493No Hit
AAAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC900.10917030567685589No Hit
TAGACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC900.10917030567685589No Hit
TCCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC900.10917030567685589No Hit
CCCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC900.10917030567685589No Hit
TCAGCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC900.10917030567685589No Hit
GCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC890.1079573022804464No Hit
TCGTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC890.1079573022804464No Hit
CAAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC880.10674429888403687No Hit
GTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC880.10674429888403687No Hit
ACTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC880.10674429888403687No Hit
TGTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC880.10674429888403687No Hit
TAATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC870.10553129548762737No Hit
TGCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC870.10553129548762737No Hit
CACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC860.10431829209121785No Hit
GTTTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC860.10431829209121785No Hit
GATTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC860.10431829209121785No Hit
TACCCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC860.10431829209121785No Hit
CATTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC860.10431829209121785No Hit
ACGACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC840.10189228529839883No Hit
ATACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC840.10189228529839883No Hit
CTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC830.10067928190198933No Hit
TCTACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC830.10067928190198933No Hit
AATTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC830.10067928190198933No Hit
AGCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC830.10067928190198933No Hit
GTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC830.10067928190198933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)