FastQCFastQC Report
Wed 8 May 2024
EGAF00005491901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72316
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC810.11200840754466508No Hit
TTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC790.10924276785220421No Hit
TCTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC760.10509430831351291No Hit
TCCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC730.10094584877482161No Hit
CTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC730.10094584877482161No Hit
TCATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC730.10094584877482161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)