FastQCFastQC Report
Wed 8 May 2024
EGAF00005491957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005491957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83029
Total Bases24.9 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC46

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG930.11200905707644317No Hit
TCCACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG920.1108046586132556No Hit
TTAACCTACGGGAGGCAGCAGGACTAGGGGGTTGGGGACAGATTTTATTG860.10357826783413025No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)