FastQCFastQC Report
Wed 8 May 2024
EGAF00005492021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68132
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC720.10567721481829391No Hit
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCC710.10420947572359537No Hit
TCATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGCAAGTC690.10127399753419833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)