FastQCFastQC Report
Wed 8 May 2024
EGAF00005492029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50496
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC530.10495880861850443No Hit
TCAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC520.10297845373891001No Hit
TTAACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCC510.10099809885931559No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)