FastQCFastQC Report
Wed 8 May 2024
EGAF00005492035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77002
Total Bases23.1 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC51

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC860.11168541076855146No Hit
CTATCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC790.1025947377990182No Hit
TTCTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGGGAAACCC780.10129607023194204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)