Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005492037 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 105402 |
Sequences flagged as poor quality | 0 |
Sequence length | 301 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCC | 111 | 0.10531109466613536 | No Hit |
TCCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGAGAGCC | 106 | 0.10056735166315629 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCCCTA | 205 | 0.0 | 295.00003 | 2 |
TGATCCT | 30 | 5.456968E-12 | 295.0 | 1 |
GTTGATT | 15 | 7.221757E-6 | 295.0 | 295 |
GCCCCCT | 35 | 0.0 | 295.0 | 1 |
GTCGCCT | 45 | 0.0 | 295.0 | 1 |
CCCCTAG | 10 | 8.454142E-4 | 295.0 | 3 |
TGCCCCT | 60 | 0.0 | 295.0 | 1 |
AGATCCT | 60 | 0.0 | 295.0 | 1 |
CGAACCT | 30 | 5.456968E-12 | 295.0 | 1 |
ACGCCTA | 85 | 0.0 | 295.0 | 2 |
CTTCCCT | 50 | 0.0 | 295.0 | 1 |
CCTAGGA | 10 | 8.454142E-4 | 295.0 | 5 |
CCGGCCT | 35 | 0.0 | 295.0 | 1 |
GAGTACT | 10 | 8.454142E-4 | 295.0 | 295 |
ATTACCT | 45 | 0.0 | 295.0 | 1 |
TGGCGAT | 15 | 7.221757E-6 | 295.0 | 295 |
TTGTCCT | 35 | 0.0 | 295.0 | 1 |
GGTCCCT | 25 | 5.275069E-10 | 295.0 | 1 |
AGGACCT | 50 | 0.0 | 295.0 | 1 |
CGCGCCT | 20 | 6.1583705E-8 | 295.0 | 1 |