FastQCFastQC Report
Wed 8 May 2024
EGAF00005492105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64155
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTC750.11690437222352115No Hit
TTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTC690.10755202244563947No Hit
CTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC680.10599329748265918No Hit
CTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTC670.1044345725196789No Hit
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGAGAGGC670.1044345725196789No Hit
TCCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCAGGCC670.1044345725196789No Hit
TCGTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTC660.10287584755669862No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)