FastQCFastQC Report
Wed 8 May 2024
EGAF00005492107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89874
Total Bases27 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCC1010.11237955359725839No Hit
TTAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCC940.10459087166477513No Hit
TTCACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCC930.10347820281727753No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)