FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005492203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65555
Sequences flagged as poor quality0
Sequence length301
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTCCTA1100.0295.000032
ATTCCTA1100.0295.000032
GTGCCTA550.0295.000032
GCCCCTA1250.0295.000032
ACAGCCT255.2568794E-10295.01
AGCCTAG108.44686E-4295.03
AACGCCT206.140726E-8295.01
ACGCCTA800.0295.02
TGCACCT255.2568794E-10295.01
CCTACCT206.140726E-8295.01
GGCACCT350.0295.01
ATCTCCT350.0295.01
CACACCT255.2568794E-10295.01
TCGATGA108.44686E-4295.08
CTCCCTA900.0295.02
AAATCCT350.0295.01
TTCGCCT350.0295.01
TGCGCCT255.2568794E-10295.01
TTACCCT108.44686E-4295.01
CGCCCCT255.2568794E-10295.01
Produced by FastQC (version 0.11.5)