FastQCFastQC Report
Wed 8 May 2024
EGAF00005492259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77365
Total Bases23.2 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC46

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTCCTACGGGAGGCAGCAGGGGTTAGGTATGACCTTGCTCCCAACCAA840.10857622956117108No Hit
TTCACCTACGGGAGGCAGCAGGGGTTAGGTATGACCTTGCTCCCAACCAA810.10469850707684354No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)