FastQCFastQC Report
Wed 8 May 2024
EGAF00005492369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54853
Total Bases16.5 Mbp
Sequences flagged as poor quality0
Sequence length301
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAACCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCC590.10756020636975187No Hit
ATACCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCC580.10573715202450186No Hit
ATATCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCC560.10209104333400178No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)