Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005492915 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3431167 |
Sequences flagged as poor quality | 0 |
Sequence length | 248 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATCAC | 3881 | 0.11311020419583191 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTGACTG | 338745 | 0.0 | 240.97957 | 4 |
ACTGGGA | 338160 | 0.0 | 240.9116 | 7 |
TCGTGAC | 339280 | 0.0 | 240.87465 | 2 |
TGACTGG | 339375 | 0.0 | 240.5265 | 5 |
TGGGAAA | 339300 | 0.0 | 240.10933 | 9 |
GACTGGG | 340540 | 0.0 | 239.37688 | 6 |
CGTGACT | 347270 | 0.0 | 235.0766 | 3 |
CTGGGAA | 352755 | 0.0 | 230.9578 | 8 |
ACGTGAC | 440 | 0.0 | 154.18823 | 2 |
GACTGGA | 1255 | 0.0 | 130.16081 | 6 |
GTCGTGA | 661110 | 0.0 | 123.588135 | 1 |
CGAGACT | 775 | 0.0 | 115.61429 | 3 |
CTGCGAA | 325 | 0.0 | 111.68704 | 8 |
TCGAGAC | 765 | 0.0 | 110.85428 | 2 |
ACTGGAA | 1510 | 0.0 | 107.37243 | 7 |
TGCGAAA | 385 | 0.0 | 97.423996 | 9 |
GCGTGGC | 495 | 0.0 | 93.00242 | 2 |
ACCGGGA | 1155 | 0.0 | 92.186134 | 7 |
ACTCGGA | 310 | 0.0 | 89.769966 | 7 |
GTGACCG | 1095 | 0.0 | 88.436325 | 4 |