FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005492948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005492948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1380756
Sequences flagged as poor quality0
Sequence length248
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTGACTGGGAAAACCCTGGGAGCACGTCGTGATAGCGGCGACTAGCT34290.24834221252705038No Hit
GTCGTGACTGGGAAAACCCTGGGCACTAGTCGTGATGTAATGTTGTAGCT19440.14079243544840653No Hit
GTCGTGACTGGGAAAACCCTGGACACCAGTCGTGATTCATAGGGATAGCT19190.13898183314068524No Hit
GTCGTGACTGGGAAAACCCTGGGCCGTGGTCGTGATCTAAATGAGTAGCT18480.13383972258675683No Hit
GTCGTGACTGGGAAAACCCTGGATATGCGTCGTGATATAGAGTTTTAGCT18400.133260329848286No Hit
GTCGTGACTGGGAAAACCCTGGTAGATTGTCGTGATCCGAACTGCTAGCT17560.12717670609434253No Hit
GTCGTGACTGGGAAAACCCTGGTATCTTGTCGTGATAGATAAGTTTAGCT16550.11986187277114856No Hit
GTCGTGACTGGGAAAACCCTGGGCAAAGGTCGTATATGAAGGAATTAGCT16280.11790642227880957No Hit
GTCGTGACTGGGAAAACCCTGGCGATTTGTCGTGATACCCCGTCTTAGCT16110.1166752127095591No Hit
GTCGTGACTGGGAAAACCCTGGCGGGTGGTCGTGATTACCAATCTTAGCT15630.11319885627873426No Hit
GTCGTGACTGGGAAAACCCTGGAGCGGTGTCGTGATCCTGAGATGTAGCT15320.11095370941715987No Hit
GTCGTGACTGGGAAAACCCTGGGATACCGTCGTGATCTGGCCTAATAGCT15050.1089982589248209No Hit
GTCGTGACTGGGAAAACCCTGGTCGACCGTCGTGATATATGCTGCTAGCT15010.10870856255558549No Hit
GTCGTGACTGGGAAAACCCTGGGTGTTGGTCGTGATCCGCATTTTTAGCT14500.10501493384783409No Hit
GTCGTGACTGGGAAAACCCTGGCCGAGGGTCGTGATCAAATTGGGTAGCT14300.10356645200165705No Hit
GTCGTGACTGGGAAAACCCTGGACCTGAGTCGTGATGAAAATTGGTAGCT14230.10305948335549511No Hit
GTCGTGACTGGGAAAACCCTGGCTGCCTGTCGTGATACCAACATATAGCT14220.10298705926318627No Hit
GTCGTGACTGGGAAAACCCTGGGCATTTGTCGTGAGAACAGTTCTTAGCT14180.10269736289395086No Hit
GTCGTGACTGGGAAAACCCTGGCCTACTGTCGTGATATGTGATACTAGCT14160.10255251470933315No Hit
GTCGTGACTGGGAAAACCCTGGTAGATCGTCGTGATGGCAGGCCTTAGCT14150.1024800906170243No Hit
GTCGTGACTGGGAAAACCCTGGGGGCCCGTCGTGATCACTTGAGGTAGCT14000.10139372923239152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)