Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005493058 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 980650 |
Sequences flagged as poor quality | 0 |
Sequence length | 248 |
%GC | 55 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATCA | 1471 | 0.15000254932952634 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGACT | 96035 | 0.0 | 241.61409 | 3 |
TGACTGG | 96155 | 0.0 | 241.36516 | 5 |
GTGACTG | 96170 | 0.0 | 241.238 | 4 |
TCGTGAC | 96335 | 0.0 | 241.00923 | 2 |
GACTGGG | 96485 | 0.0 | 240.3019 | 6 |
ACTGGGA | 96570 | 0.0 | 239.95226 | 7 |
CTGGGAA | 98835 | 0.0 | 234.3798 | 8 |
TGGGAAA | 98995 | 0.0 | 234.03767 | 9 |
CGAGACT | 210 | 0.0 | 184.48074 | 3 |
ACGTGAC | 170 | 0.0 | 178.14655 | 2 |
TCGAGAC | 260 | 0.0 | 149.09494 | 2 |
TCGTTAC | 85 | 0.0 | 142.51723 | 2 |
CGTTACT | 70 | 0.0 | 138.36055 | 3 |
ACCGGGA | 325 | 0.0 | 126.59499 | 7 |
CGGGGAA | 270 | 0.0 | 125.491776 | 9 |
GTCGTGA | 187730 | 0.0 | 123.60995 | 1 |
CGTGACC | 310 | 0.0 | 121.065475 | 3 |
GCGTGGC | 160 | 0.0 | 113.56841 | 2 |
CCGTGAC | 105 | 0.0 | 103.83398 | 2 |
GACGTGA | 305 | 0.0 | 103.30878 | 1 |