FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005493060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575270
Sequences flagged as poor quality0
Sequence length248
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTGACTGGGAAAACCCTGGACAAAAGTCGTGATTGACTCAAACGATG10160.1766127209831905No Hit
GTCGTGACTGGGAAAACCCTGGTCTCTTGTCGTGATCCGCGGGAGCGATG9550.16600900446746744No Hit
GTCGTGACTGGGAAAACCCTGGCACACCGTCGTGATGGCAAGAGTCGATG7950.13819597754098076No Hit
GTCGTGACTGGGAAAACCCTGGGCTGGGGTCGTGATAGACCGACTCGTTG7820.13593616910320372No Hit
GTCGTGACTGGGAAAACCCTGGGTCCACGTCGTGATCGGCCATGACGATG7670.13332869782884557No Hit
GTCGTGACTGGGAAAACCCTGGACCCCGGTCGTGATTCAAATATGCGATG7180.12481095833260904No Hit
GTCGTGACTGGGAAAACCCTGGTCGCCAGTCGTGATATGGAGTGCCGATG6970.12116049854850766No Hit
GTCGTGACTGGGAAAACCCTGGCTTATGGTCGTGATGCAAACGAACGATG6680.11611938741808193No Hit
GTCGTGACTGGGAAAACCCTGGGATCCTGCTATGTCAACGAGCAGCGATG6660.11577172458150087No Hit
GTCGTGACTGGGAAAACCCTGGGCATTAGTCGTGATTCGTTGGTGCGATG6370.11073061345107514No Hit
GTCGTGACTGGGAAAACCCTGGACACGTGTCGTGATTAGAGTACTCGATG6360.1105567820327846No Hit
GTCGTGACTGGGAAAACCCTGGAGGCATGTCGTGATATAAGACTACGATG6210.10794931075842648No Hit
GTCGTGACTGGGAAAACCCTGGAACAATGTCGTGATGCACGTTTTCGATG5910.10273436820971023No Hit
GTCGTGACTGGGAAAACCCTGGATTCCAGTCGTGATTCCGCGTCCCGATG5850.10169137969996697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)