FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005493072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences886429
Sequences flagged as poor quality0
Sequence length248
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGTGACTGGGAAAACCCTGGACCGAAGTCGTGATGACAATACTTGACC11880.13402088604953133No Hit
GTCGTGACTGGGAAAACCCTGGACATCTGTCGTGATCTCTGGGATTGACC11410.12871871294824513No Hit
GTCGTGACTGGGAAAACCCTGGTGTGTCGTCGTGATTGGCTGGATTGACC11380.12838027636731197No Hit
GTCGTGACTGGGAAAACCCTGGAACCTTGTCGTGATATGAGCCCTTGACC11050.12465747397704724No Hit
GTCGTGACTGGGAAAACCCTGGCCAAAGGTCGTGATAGCTTCTGATGACC10550.1190168642948279No Hit
GTCGTGACTGGGAAAACCCTGGGAACTGGTCGTGATTCTGAATAATGACC10440.11777593016473965No Hit
GTCGTGACTGGGAAAACCCTGGCTTATTGTTTGATAATGTCCATATGACC10400.1173246813901621No Hit
GTCGTGACTGGGAAAACCCTGGGTACCAGTCGTGATTTCGTTGACTGACC10380.11709905700287332No Hit
GTCGTGACTGGGAAAACCCTGGGTCCCTGTCGTGATCAGACGTTGTGACC10250.1156324984854963No Hit
GTCGTGACTGGGAAAACCCTGGCGACTTGTCGTGATATGCATGAGTGACC10100.11394031558083051No Hit
GTCGTGACTGGGAAAACCCTGGCTGCTTGTCGTGATAACACTTGATGACC10090.1138275033871861No Hit
GTCGTGACTGGGAAAACCCTGGCCAAAGGTCGTGATACCACAGTATGACC9880.11145844732065399No Hit
GTCGTGACTGGGAAAACCCTGGACAAATGTCGTGATCAGAAGTGCTGACC9860.11123282293336523No Hit
GTCGTGACTGGGAAAACCCTGGATGGGTGTCGTGATATGAGCTTTTGACC9750.10999188880327698No Hit
GTCGTGACTGGGAAAACCCTGGTGGTTTGTCGTGATACATATGACTGACC9750.10999188880327698No Hit
GTCGTGACTGGGAAAACCCTGGGGCATCGTCGTGATTCAAAGTTGTGACC9740.10987907660963259No Hit
GTCGTGACTGGGAAAACCCTGGCGACCGGTCGTGATCTATAGCACTGACC9650.10886376686683309No Hit
GTCGTGACTGGGAAAACCCTGGTGCGCGGTCGTGATCTTCAGTTGTGACC9620.10852533028589993No Hit
GTCGTGACTGGGAAAACCCTGGGTGCCAGTCGTGATCACCAAGGGTGACC9450.10660752299394537No Hit
GTCGTGACTGGGAAAACCCTGGGCGCCTGTCGTGATATTTCGTAGTGACC9440.10649471080030098No Hit
GTCGTGACTGGGAAAACCCTGGCACCGTGTCGTGATTCATACGTCTGACC9400.10604346202572343No Hit
GTCGTGACTGGGAAAACCCTGGTTAGAAGTCGTGATGGCAAGTCTTGACC9360.1055922132511459No Hit
GTCGTGACTGGGAAAACCCTGGCCGAAAGTCGTGATTCACCATGATGACC9270.10457690350834642No Hit
GTCGTGACTGGGAAAACCCTGGCGCACCGTCCGTGTTACGTGAAATGACC9230.10412565473376886No Hit
GTCGTGACTGGGAAAACCCTGGGACCTGGTCGTGATCTTATCCTCTGACC9220.10401284254012448No Hit
GTCGTGACTGGGAAAACCCTGGGATTTCGTCGTGATCAGTAATACTGACC9210.10390003034648009No Hit
GTCGTGACTGGGAAAACCCTGGGCACAGGTCGTGATTGGAATCCTTGACC9180.10356159376554692No Hit
GTCGTGACTGGGAAAACCCTGGCATCCTGTCGTGATGGCCCGGCCTGACC9090.10254628402274746No Hit
GTCGTGACTGGGAAAACCCTGGCCCATTGTCGTGATATTAACATATGACC9030.10186941086088112No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)