FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16433201
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGAG55000.018.3328151
TGGCTGG55250.018.322281
GTAACTG74550.018.1409651
TGACGGC28100.017.9769651
CGGACTG35100.017.9541471
CGAGCAC66400.017.9421711
AGATTGC84600.017.9013921
GGGACCT42200.017.8964061
TAGTTGG48350.017.8130381
TATGCCC51000.017.7700791
CTAATGG70700.017.6998351
GGGAATG30550.017.6485421
GGGAGAT36400.017.5877341
TCTTGAG45350.017.5055718
GGAAAGC43400.017.4246231
GGGTTGC38150.017.4102441
GTGCTGC26500.017.3937579
CGCTGGA38450.017.3264331
AGACTGG48200.017.3002388
GCGCGAT32950.017.2738111
Produced by FastQC (version 0.11.5)