FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16532704
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGCTGG54700.018.526491
GTAACTG69250.018.2887881
ATGGGAG55100.018.2285921
CGAGCAC67400.018.1377051
GGGACCT41100.018.0606381
CGGACTG37100.017.9855161
TATGCCC53750.017.9233341
AGATTGC92650.017.8267691
TAGTTGG51200.017.8195171
ATGGAGA30650.017.7545854
TGACGGC28500.017.6911751
ATTGGCG26900.017.655019
TTCCGCG27400.017.5517797
TGCGGGT32750.017.533621
CTAATGG65550.017.443941
AGAAGAA27100.017.4140328
GGAAAGC44100.017.3537711
AGACTGG49750.017.3237088
AGGACGG20500.017.31425310
CTTAGGA45450.017.256521
Produced by FastQC (version 0.11.5)