FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17186090
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAATG46950.018.2378651
ACTGATG55900.018.216791
GGCGACT48700.017.7468241
TAGCCGG70050.017.7071821
TGACGGC41200.017.6268711
CCGGAGG14400.017.5047634
ACTGAAC46050.017.4213031
GCCGGAG19200.017.4005173
TGCGGGT32000.017.3804361
ACGAGGA36050.017.3424571
ATGCGAT47500.017.289621
TGGCTGG35750.017.2641431
GCGCGAT32950.017.1829171
GTTGTGG34500.017.1277688
CGTGAGA30650.017.12630810
GTAACGG47300.017.07989310
CAATGGA54900.017.0465268
ATTGGTG50600.017.0013641
GACCTGG35350.016.8935431
TTGGAAC49950.016.8421061
Produced by FastQC (version 0.11.5)