FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17291528
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGAATG47950.018.1713891
ACTGATG53050.017.8387471
GCGCGAT32150.017.8292161
GGCGACT51200.017.7408521
TGCGGGT30550.017.4859261
GTTGTGG31850.017.4227248
TGACGGC39650.017.3833981
TGGCTGG36000.017.3674531
TAGCCGG70300.017.2893851
ATGCGAT47550.017.188191
TTGGAAC50700.017.14631
ACTGAAC44900.017.1109241
TTGAACG44050.017.1004541
AGCCGGG28800.017.05392
CGGACTG27300.017.0391881
ATGGGAG38750.017.0384791
CAATGGA55600.017.0297268
CGCGCCA36700.017.000139
GGGACCT34050.016.863721
CCGGGAT28500.016.8482571
Produced by FastQC (version 0.11.5)