FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493132

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493132
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18287941
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGAGCCG51400.019.207851
GCGGGTG24350.018.7674052
TGGATGG43350.018.68486610
GACCTGG73450.018.6847381
GCGCGAT51050.018.5949571
TGAGAGG71550.018.4119951
TGCGGGT38600.018.0880951
CCTTACG74850.018.041251
TGACGGA38350.017.93978110
GTAACTG90650.017.9202041
CGGACTG37150.017.878621
GTGCAGC52550.017.8547941
CGAGCCG20500.017.8531232
GGAACGG39600.017.8280410
GGGTGAG40150.017.8076842
ACGAGCC46850.017.6785011
CTAATGG44450.017.6653631
CGCTGGA41050.017.6420921
CCGCGAG22300.017.6227873
TTAGGCA69950.017.6033381
Produced by FastQC (version 0.11.5)