FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493153

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493153
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56116270
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCTGG260900.018.4382481
GCGCGAT133500.018.1143861
TGAGCCG153100.017.9379961
GCGAGGA81850.017.631585
TGGCTGG155650.017.5541651
TGAGAGG176500.017.5373741
GGGACCT134000.017.4123971
GCATGCG164100.017.4120641
ATGCGAT159800.017.3486271
TGCGGGT134050.017.3462141
TAGCCGG132200.017.309051
ACGAGCC161850.017.3080861
AGGATGG136450.017.2582638
TGACGGC103950.017.2506071
CATGGCG126650.017.2384071
CGATTGA205900.017.2190231
ACTGAAC159800.017.204681
TACGGGC119050.017.1459771
CGGACAC171350.017.1364381
GTAACTG193800.017.029771
Produced by FastQC (version 0.11.5)