FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57107590
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCTGG265800.018.3909741
TGAGCCG155650.018.2022861
GCGCGAT136100.017.9659121
GCATGCG173500.017.799441
TGAGAGG180450.017.7734051
GGGACCT131450.017.5819841
TGGCTGG163000.017.4980831
TGCGGGT130900.017.47251
AGGATGG140700.017.3628048
ACGAGCC159150.017.3244171
GCGGGTG69650.017.287342
TGACGGC106800.017.2108691
ATGCGAT163650.017.1963631
ACTGAAC167350.017.1747171
CGGACAC167800.017.1226981
CGATTGA207500.017.0902791
GCGAGGA80000.017.0012825
GTAACTG193800.016.98771
TAGCCGG140950.016.943291
GTGCAGC164150.016.9368421
Produced by FastQC (version 0.11.5)