FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19206648
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGACGGC48300.018.4522421
ATTGGTG87700.018.4314841
CTCGAGG58150.018.3197041
GGCGACT51550.018.1620861
GCGCGAT41950.018.0263751
GGGACCT44900.017.8222371
AGCCGGC44700.017.8070892
TGGCTGG53200.017.7116011
TACGGGC57050.017.6209351
ATGCGAT47400.017.5997411
CATGGCG53850.017.5535371
GCCGGCA44750.017.541393
ATGGGAG62100.017.5249141
TAGTTGG56700.017.5003681
TAGCCGG77350.017.4966951
CCGGGAT46050.017.4857711
GACCTGG56000.017.4690551
ACTGAAC58500.017.3551651
TGGGCGT33050.017.3118361
TCGAGGA32200.017.2976342
Produced by FastQC (version 0.11.5)