FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19431712
Sequences flagged as poor quality0
Sequence length10
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATGGGTTAT1923050398.9645328214004No Hit
AATGGGTTAG333570.17166269240713325No Hit
AGTGGGTTAT220820.11363898353372054No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)