FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19306399
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGACT54850.018.4390831
CTCGAGG61350.018.3606761
TGACGGC47150.018.352671
ATTGGTG89550.018.2090321
ATGCGAT50500.018.105881
GACCTGG55650.017.9043671
GCGCGAT43650.017.8074461
AGCCGGC45100.017.6997682
GGGACCT42350.017.6926631
TACGGGC58100.017.6142581
CATGGCG54600.017.5158021
GCCGGCA45350.017.3595563
CGGACTG38400.017.3503341
AGACGTT73100.017.3116321
CTCGGGA60350.017.2725031
ACGGAGA60700.017.2388321
CAAGGCC66500.017.1794531
TCGAGGA32250.017.1528632
TGGGCGT33000.017.127711
TGGCTGG53900.017.0936851
Produced by FastQC (version 0.11.5)