FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005493215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005493215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16407882
Sequences flagged as poor quality0
Sequence length26
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGCTGG55950.018.4141581
GGGACCT42850.018.301221
ATGGGAG53100.018.2157361
GTAACTG74600.018.074481
TATGCCC51450.017.9639281
AGATTGC89150.017.9408021
CGAGCAC65950.017.897071
TAGTTGG50200.017.6142161
CTAATGG68050.017.5211621
GGGAGAT39500.017.4982951
TGACGGC29050.017.4917131
CGGACTG34000.017.4752061
GGAAAGC42650.017.4489251
GGAACGG25250.017.34604310
TCTTGAG46300.017.342928
ATGGAGA31000.017.3221424
GACCTGG51250.017.253341
AGACTGG51150.017.2429128
GTGCTGC28900.017.2313449
GGCTCGA31300.017.2249981
Produced by FastQC (version 0.11.5)