FastQCFastQC Report
Wed 1 May 2024
EGAF00005494018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26715842
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA684250.2561214428502759No Hit
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCG275430.10309613299854072No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA274360.10269562157165027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)