FastQCFastQC Report
Thu 16 May 2024
EGAF00005494049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47985977
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC986790.20564132725691925No Hit
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC875340.18241579201357097No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA760390.15846087701830058No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT617660.128716770734917No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)