Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005494066 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27124749 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT | 923693 | 3.4053513269376245 | Illumina Single End PCR Primer 1 (100% over 50bp) |
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 96009 | 0.3539535057080159 | Illumina Single End PCR Primer 1 (100% over 50bp) |
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA | 27893 | 0.10283228795960472 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGCGTCG | 171545 | 0.0 | 57.53459 | 9 |
AGAGCGT | 174520 | 0.0 | 56.483696 | 7 |
GAGCGTC | 177550 | 0.0 | 55.43059 | 8 |
AAGAGCG | 182800 | 0.0 | 54.13306 | 6 |
CGGAAGA | 203535 | 0.0 | 48.800194 | 3 |
TCGGAAG | 206810 | 0.0 | 48.05549 | 2 |
GAAGAGC | 213055 | 0.0 | 46.67097 | 5 |
ATCGGAA | 214830 | 0.0 | 46.41838 | 1 |
CGTATCA | 115765 | 0.0 | 45.59156 | 48-49 |
TCGCCGT | 117025 | 0.0 | 44.763813 | 44-45 |
GTGGTCG | 118695 | 0.0 | 44.348522 | 40-41 |
GGTCGCC | 119795 | 0.0 | 44.081608 | 42-43 |
GCCGTAT | 121765 | 0.0 | 43.212437 | 46-47 |
CTCGGTG | 123810 | 0.0 | 43.14341 | 36-37 |
CGGTGGT | 124420 | 0.0 | 42.594128 | 38-39 |
GTAGATC | 128545 | 0.0 | 42.421833 | 30-31 |
ATCTCGG | 128330 | 0.0 | 42.208424 | 34-35 |
GGAAGAG | 237670 | 0.0 | 41.866016 | 4 |
AGATCTC | 131270 | 0.0 | 41.25209 | 32-33 |
CGCCGTA | 114420 | 0.0 | 41.049862 | 44-45 |