FastQCFastQC Report
Sat 11 May 2024
EGAF00005494067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27819549
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT580930.20882078282433697TruSeq Adapter, Index 18 (97% over 40bp)
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT531500.19105270182489298No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG358730.12894889129942402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)