Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005494068 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27819549 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG | 61972 | 0.22276421519270498 | Illumina Single End PCR Primer 1 (100% over 50bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATCA | 12545 | 0.0 | 34.114574 | 48-49 |
GCCGTAT | 12655 | 0.0 | 33.818134 | 46-47 |
TCGCCGT | 14645 | 0.0 | 29.336409 | 44-45 |
GGTCGCC | 15915 | 0.0 | 27.264105 | 42-43 |
CGCCGTA | 11505 | 0.0 | 27.248606 | 46-47 |
GTGGTCG | 16275 | 0.0 | 26.822104 | 40-41 |
CCGTATC | 12720 | 0.0 | 24.645784 | 48-49 |
GGCGCGT | 12685 | 0.0 | 24.009535 | 1 |
CGGTGGT | 19375 | 0.0 | 22.580086 | 38-39 |
GGGCGAT | 5050 | 0.0 | 22.1102 | 1 |
GGCGATC | 4975 | 0.0 | 21.869785 | 2 |
TGGTCGC | 14775 | 0.0 | 21.250214 | 42-43 |
CTCGGTG | 20765 | 0.0 | 21.14865 | 36-37 |
ATCTCGG | 23265 | 0.0 | 19.427341 | 34-35 |
CGCGTGC | 15775 | 0.0 | 19.275814 | 3 |
GTAGATC | 23045 | 0.0 | 18.952866 | 30-31 |
ACGTGCG | 4965 | 0.0 | 18.655622 | 6 |
TGGCGCG | 13205 | 0.0 | 18.277948 | 3 |
GCGCGTG | 16725 | 0.0 | 18.152517 | 2 |
TCGGTGG | 17835 | 0.0 | 17.77812 | 38-39 |