FastQCFastQC Report
Thu 16 May 2024
EGAF00005494073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41503198
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC666780.16065749921247033No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA494420.1191281693521545No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC486580.11723915829329584No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)