EGAF00005494102 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005494102
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26684062
Sequences flagged as poor quality	0
Sequence length	101
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG	177391	0.6647825956932644	Illumina Single End PCR Primer 1 (100% over 50bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT	59853	0.22430243191610033	Illumina Single End PCR Primer 1 (100% over 50bp)
GTTACAGCCCCCCCGGCAGCAGCACTCGCCGAATCCCGGGGCCGAGGGAG	38980	0.14607970855411745	No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA	31299	0.11729473571152697	No Hit
GGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCG	28312	0.10610078780359603	No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT	27705	0.10382602169040081	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATCA	28480	40.361515	48-49
GCCGTAT	28710	40.07126	46-47
TCGCCGT	32660	35.290367	44-45
GTGGTCG	33535	34.73797	40-41
GGGCGAT	6795	34.185856	1
GGTCGCC	35585	32.65	42-43
CGCCGTA	27925	31.204454	46-47
GGCGATC	7360	30.657185	2
CCGTATC	28970	30.128042	48-49
CGGTGGT	39200	29.772326	38-39
ATCTCGG	41500	28.442722	34-35
GTAGATC	41945	27.687944	30-31
TCATTAA	42465	27.544643	52-53
TATCATT	42535	27.460228	50-51
TGGTCGC	32200	27.260876	42-43
CTCGGTG	43065	27.221647	36-37
AGATCTC	45200	25.941	32-33
GTATCAT	34830	25.284147	50-51
GAGTGTA	47730	24.426636	26-27
TCGGTGG	36475	24.111382	38-39