Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005494112 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 26912390 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT | 32028 | 0.11900838238447049 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCGACA | 10350 | 0.0 | 27.215048 | 6 |
GCGACAT | 10455 | 0.0 | 27.168894 | 7 |
CGACATC | 12190 | 0.0 | 23.30195 | 8 |
CTGCGAC | 12135 | 0.0 | 23.290134 | 5 |
GCTGCGA | 13100 | 0.0 | 21.501968 | 4 |
CGCGTGC | 15795 | 0.0 | 21.022982 | 1 |
GGTCGAC | 5480 | 0.0 | 20.7183 | 1 |
GGCGATC | 3660 | 0.0 | 18.04141 | 1 |
GCGTGCC | 18425 | 0.0 | 17.918545 | 2 |
TCGACCC | 6725 | 0.0 | 17.588617 | 3 |
GGCGCGT | 10095 | 0.0 | 17.552023 | 3 |
ACGTGCG | 4115 | 0.0 | 17.199318 | 6 |
GTCGACC | 7030 | 0.0 | 16.62284 | 2 |
GGCTGCG | 17195 | 0.0 | 16.603397 | 3 |
TCACCCG | 7465 | 0.0 | 15.908706 | 3 |
TGGCGCG | 11140 | 0.0 | 15.862924 | 2 |
CGTGCGG | 7790 | 0.0 | 15.24386 | 9 |
ACCCGTG | 8180 | 0.0 | 14.9236355 | 6 |
TGCGCGA | 5070 | 0.0 | 13.865838 | 9 |
CCGTGCG | 8585 | 0.0 | 13.832303 | 8 |