FastQCFastQC Report
Wed 15 May 2024
EGAF00005494144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41297265
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT1188190.2877163899352657No Hit
CGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGG507100.12279263529921412No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA457020.11066592424462007No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)