Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005494157 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31084518 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 48 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT | 65632 | 0.21114047835646027 | No Hit |
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG | 61705 | 0.19850717968346812 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ACCGCGT | 4470 | 0.0 | 32.197525 | 6 |
CCGCGTT | 4980 | 0.0 | 28.99557 | 7 |
AGACCGC | 6040 | 0.0 | 24.064224 | 4 |
CAGACCG | 7005 | 0.0 | 21.698477 | 3 |
GACCGCG | 6830 | 0.0 | 21.280807 | 5 |
CGCGTTC | 6950 | 0.0 | 20.981714 | 8 |
GCGTTCT | 7705 | 0.0 | 18.987398 | 9 |
GAGTCTT | 39670 | 0.0 | 17.07437 | 4 |
CGCACTA | 26980 | 0.0 | 16.998665 | 82-83 |
TGGAGTC | 41495 | 0.0 | 16.43789 | 2 |
AGTCTTG | 42445 | 0.0 | 16.38332 | 5 |
CGTACGG | 1365 | 0.0 | 16.355078 | 3 |
GTCTTGG | 42730 | 0.0 | 16.318512 | 6 |
GGAGTCT | 42435 | 0.0 | 16.174507 | 3 |
GTTCGAT | 3280 | 0.0 | 16.077051 | 1 |
TCGACCC | 3990 | 0.0 | 15.356922 | 2 |
GTCGGTT | 2825 | 0.0 | 14.966796 | 1 |
CGATCGG | 30840 | 0.0 | 14.93211 | 70-71 |
GCGTACG | 1470 | 0.0 | 14.863732 | 2 |
CGGCATA | 31525 | 0.0 | 14.72067 | 74-75 |