FastQCFastQC Report
Fri 3 May 2024
EGAF00005494163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36698618
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length126
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAAC662890.18063078015635356No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC561110.1528967657583182No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA548530.1494688437586396No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)