Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005494172 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 30798695 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA | 45570 | 0.14796081457347462 | No Hit |
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT | 41923 | 0.13611940376045154 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGCGAT | 9570 | 0.0 | 43.730404 | 1 |
GGCGATC | 10090 | 0.0 | 40.58135 | 2 |
CGATCTG | 16170 | 0.0 | 25.732912 | 4 |
GCGATCT | 16725 | 0.0 | 25.192057 | 3 |
CGGTGGC | 23245 | 0.0 | 24.727222 | 1 |
GGCGCGT | 25355 | 0.0 | 22.761848 | 4 |
TGGCGCG | 25575 | 0.0 | 22.529486 | 3 |
GGTGGCG | 27780 | 0.0 | 21.613962 | 1 |
GCGCGTG | 29085 | 0.0 | 19.940716 | 5 |
CGCGTGC | 30275 | 0.0 | 19.125542 | 6 |
GGTCGAC | 6670 | 0.0 | 19.086596 | 1 |
TGCGACA | 23945 | 0.0 | 18.765945 | 6 |
GCGACAT | 24595 | 0.0 | 18.50175 | 7 |
GCGTGCC | 33150 | 0.0 | 17.45251 | 7 |
GTGGCGC | 34345 | 0.0 | 17.371466 | 2 |
GCTGCGA | 27000 | 0.0 | 16.69542 | 4 |
CTGCGAC | 27160 | 0.0 | 16.632015 | 5 |
CGACATC | 29005 | 0.0 | 15.721524 | 8 |
CGTGCCT | 39345 | 0.0 | 14.994373 | 8 |
GTCGACC | 8725 | 0.0 | 14.917481 | 2 |