FastQCFastQC Report
Wed 1 May 2024
EGAF00005494176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005494176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28971088
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA364840.12593244685874413No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT298240.102944010939458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)