Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005494181 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31115107 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC | 203800 | 0.6549873024701474 | TruSeq Adapter, Index 7 (100% over 50bp) |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT | 184088 | 0.5916354393381967 | No Hit |
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG | 102618 | 0.3298012119964749 | No Hit |
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC | 57761 | 0.1856365141215809 | No Hit |
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC | 53536 | 0.17205790100609328 | No Hit |
CTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTC | 43466 | 0.13969420063379503 | No Hit |
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT | 42412 | 0.1363067785690083 | No Hit |
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT | 38783 | 0.1246436337178593 | No Hit |
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT | 36867 | 0.11848585319022044 | No Hit |
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA | 34672 | 0.11143140211602037 | No Hit |
CTCGTATACCCTTGACCGAAGACCGGTCCTCCTCTATCGGGGATGGTCGT | 33836 | 0.10874460434926352 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 32775 | 0.0 | 39.30716 | 42-43 |
ATGCCGT | 34375 | 0.0 | 37.04255 | 46-47 |
TATGCCG | 31680 | 0.0 | 36.013287 | 44-45 |
GCCGTCT | 35180 | 0.0 | 35.82387 | 48-49 |
GTATGCC | 36285 | 0.0 | 35.5113 | 44-45 |
TCTCGTA | 32770 | 0.0 | 35.06186 | 40-41 |
CGTATGC | 34700 | 0.0 | 32.9406 | 42-43 |
CGTCTTC | 39145 | 0.0 | 32.037357 | 50-51 |
TGCCGTC | 36320 | 0.0 | 31.02692 | 46-47 |
CCGTCTT | 36685 | 0.0 | 30.427082 | 48-49 |
CATCTCG | 38110 | 0.0 | 30.136871 | 38-39 |
ATCTCGT | 33715 | 0.0 | 30.038689 | 38-39 |
TGGAGTC | 64015 | 0.0 | 28.667109 | 2 |
GAGTCTT | 66210 | 0.0 | 27.702396 | 4 |
GGAGTCT | 66485 | 0.0 | 27.694908 | 3 |
AGTCTTG | 69380 | 0.0 | 26.751385 | 5 |
GTCTTGG | 69655 | 0.0 | 26.686659 | 6 |
GCTTGAA | 52580 | 0.0 | 25.029652 | 58-59 |
CTTGGAA | 74055 | 0.0 | 24.80621 | 8 |
TTGGAAG | 75450 | 0.0 | 24.28465 | 9 |