FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005497438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65562980
Sequences flagged as poor quality0
Sequence length35-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1355160.20669591284593836No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN963980.14703114471001777No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC839450.12803719416048506No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA751030.11455092492745143No Hit
CGTCTCACTCAAACCGCCTCGAACCCCACACCGACGAGCTCCCTCAGGAC658590.10045150479737193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)