FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005497590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005497590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40354241
Sequences flagged as poor quality0
Sequence length35-101
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG1298050.3216638370177746No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA548740.13598075106901403No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG540620.13396857098613252No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)